Storage

Last update: 20250120

Summary

For a full omic analysis we estimate that 250GB of space is used per subject.

Sample count

The number of subjects changes depending on the data type. We have approximately 180 subjects currently.

Data usage

All project data
- total: 45T
Estimate per subject total data
- All: 45000/180 = 250 GB per subject
Current size prod raw data
- WGS: 12.8T
- RNA: 793.0G
Estimate per subject raw data
- WGS: 12800/180 = 70 GB per subject
- RNA: 800/180 = 4.5 GB per subject

All users data

`df -h /project/`

Filesystem Size Used Avail Use% Mounted on
tenant_name 77T 45T 32T 60% /project

Raw prod data

Size of WGS

du -sh prod/*/downloads/WGS* | awk '
    {
        # Convert all sizes to gigabytes for consistency
        size = $1
        sub(/[[:alpha:]]$/, "", size)
        unit = substr($1, length($1))
        if (unit == "T") size *= 1024
        if (unit == "G") size += 0
        total += size
    }
    END {
        if (total >= 1024) {
            printf "%.1fT\n", total / 1024
        } else {
            printf "%.1fG\n", total
        }
    }'

Size of RNA

du -sh prod/*/downloads/RNA* | awk '
    {
        # Convert all sizes to gigabytes for consistency
        size = $1
        sub(/[[:alpha:]]$/, "", size)
        unit = substr($1, length($1))
        if (unit == "T") size *= 1024
        if (unit == "G") size += 0
        total += size
    }
    END {
        if (total >= 1024) {
            printf "%.1fT\n", total / 1024
        } else {
            printf "%.1fG\n", total
        }
    }'

Size of individual batches

du -sh prod/*/downloads/WGS*
du -sh prod/*/downloads/RNA*