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Last update: 20230727

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FASTP

A tool designed to provide fast all-in-one preprocessing for FastQ files. It performs QC, checks adapters, trimming, filtering, splitting/merging, etc. This tool is developed in C++ with multithreading supported to afford high performance.

  • fastp.sh runs on every file in the raw data directory.
  • Outputs the same directory structure with processed .fq.gz data.
  • Checks for existing output before starting and therefore can run incrementally.
  • Prints qulity reports to .json and .html.